PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027632.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 290aa    MW: 31549.9 Da    PI: 6.0741
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027632.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.3e-17201237135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cgt +  Tp++Rrgp+g+++LCnaCGl+++ +g+
  CCG027632.1 201 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 237
                  *******99************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.1E-1169104IPR010399Tify domain
PROSITE profilePS5132014.88369104IPR010399Tify domain
PfamPF062004.3E-1273103IPR010399Tify domain
PfamPF062031.1E-15133175IPR010402CCT domain
PROSITE profilePS5101712.451133175IPR010402CCT domain
PROSITE profilePS501149.684195244IPR000679Zinc finger, GATA-type
SMARTSM004013.6E-14195248IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12197245No hitNo description
Gene3DG3DSA:3.30.50.103.1E-15199241IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.71E-16200244No hitNo description
PROSITE patternPS003440201228IPR000679Zinc finger, GATA-type
PfamPF003209.6E-15201237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MYTPSQPMNV HNQIVSTGVD DDGAPADPID HHHHIHYEDG TPAVVVEDVS PDSVYVAAGV  60
AASELGIQPS DCSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGSELTPG LEMTTQNQRG  120
VVEYPPRCTQ PQRAASLSRF RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFTSAKKSEG  180
GYGWDAGQDS AQDDSQHETS CTHCGTNSKS TPMMRRGPSG PRSLCNACGL FWANRGTLRD  240
HSKKALEHSV APIDLGETEA NESDSVPAID THDNPVTYAN GGDTALITDH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2771451e-138GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017003.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH67e-92GAT25_ARATH; GATA transcription factor 25
TrEMBLB9GN860.0B9GN86_POPTR; Zinc finger family protein
STRINGPOPTR_0002s11150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.23e-86GATA-type zinc finger protein with TIFY domain